[{"type":"thinking","thinking":"Session registered. Now the git commit. Per the protocol: git add specific files + commit with session number. Files changed/added this session:\n- research/lean/NguyenRH1/NguyenRH1/LiReflect.lean (NEW)\n- research/lean/NguyenRH1/NguyenRH1.lean (root import)\n- research/lean/NguyenRH1/Scratch.lean (audit script rotation)\n- research/lean/NguyenRH1/audit-session025-axioms.txt (NEW)\n- research/journal/session-025.md (NEW)\n- STATE.md\n- NGUYEN.md\n- research/research.db (binary, registered)\n\nNote from git status at conversation start: there were untracked research/paper artifacts (draft.bbl, paperA.pdf etc. and research/paper/submit/) — those are NOT mine to commit (paper artifacts; check whether previous sessions committed them — the gitStatus shows them as untracked ?? which suggests paper build artifacts are typically NOT committed... wait paperA.pdf IS gitignored? STATE says \"draft.pdf is gitignored\". The untracked list includes paperA.pdf, paperB.pdf, draft.bbl etc. and research/paper/submit/ (cover-letter.md + referee-list.md from session 013 — those were probably committed? They show as untracked \"?? research/paper/submit/\" meaning the whole submit dir is untracked. Hmm — session 013's commit should have included them... maybe they were committed and these are NEW files inside submit/? The ?? on the directory means the entire directory is untracked. Not my concern now — the freeze protocol covers paper files; I leave them alone.\n\nLet me check git status and diff to confirm my changed files, then commit. Use the commit identity: git -c user.name=\"NGUYEN-RH-1\" -c user.email=\"research@local\" commit (config NOT modified) — per STATE handoff.","signature":""},{"type":"text","text":"Session registered. Now the commit."},{"type":"tool_use","id":"Bash_167","name":"Bash","input":{"command":"cd /d/Python/Quantum && git status --short | head -20 && git log --oneline -3","description":"Show working tree status and recent commits"},"extra_content":null}]