[{"type":"thinking","thinking":"Done. Also update memory with these user directives (pacing, 5pm break prompt, plan mutability) — these are collaboration preferences not fully derivable... actually they ARE now in NGUYEN.md which is auto-loaded. Per rules, skip duplicating. Brief confirmation.","signature":""},{"type":"text","text":"Committed (`2e4c7e3`). Both directives are now permanent parts of the plan:\n\n**§5 — Plan is not concrete:**\n- Checklist can be updated, extended, reordered, or pruned anytime as the research demands.\n- Explicit rule: if a promising direction appears that isn't in the plan, *the plan changes, not the direction*. The ultimate goal — solving RH — always outranks the checklist.\n- Every plan change gets committed to git with a one-line rationale, so the evolution of the research strategy is itself documented (useful for the paper's narrative).\n\n**§8.5 — Pacing & sub-stages:**\n- No rush; rigor outranks speed.\n- Any stage expected to take a few hours gets broken into sub-stages, each ending in a clean, committed, resumable state — so a shutdown mid-stage never costs more than a few minutes of work.\n- When work runs long — especially approaching **5:00 PM** — I'll pause and ask whether you want to continue, break, or log off, and run the full save-and-commit protocol before stopping.\n\nEverything is persisted. Whenever you're ready, we begin Phase 0.1 — parsing Notes.txt into the master equation/tool index (`D-001`)."}]