← Session 3 — Project kickoff: RH blueprint, staged workflow + archive design
Now closing out Phase 0.1: indexes, database registration, STATE.md, checklist, journal.
tool: Edit ok
input
{
"file_path": "D:\\Python\\Quantum\\research\\derivations\\index.md",
"old_string": "| # | Title | Phase/Task | Status | Date |\n|---|-------|-----------|--------|------|\n| \u2014 | (empty) | | | |",
"new_string": "| # | Title | Phase/Task | Status | Date |\n|---|-------|-----------|--------|------|\n| D-001 | Master equation & tool index (quantum formalism; living doc) | 0.1 | in-progress (grows) | 2026-08-17 |"
}
result 2026-08-17 18:27:10Z → 2026-08-29 05:44:16Z
{
"filePath": "D:\\Python\\Quantum\\web\\dashboard\\views.py",
"oldString": " messages.error(request, \"Feedback text cannot be empty.\")\n\n q = (request.GET.get(\"q\") or \"\").strip()\n cat = request.GET.get(\"category\") or \"\"\n status = request.GET.get(\"status\") or \"\"\n items = Feedback.objects.all()\n if q:\n from django.db.models import Q\n items = items.filter(Q(text__icontains=q) | Q(name__icontains=q))\n if cat:\n items = items.filter(category=cat)\n if status:\n items = items.filter(status=status)\n return render(request, \"dashboard/feedback.html\", {\n \"items\": items[:200],\n \"q\": q, \"cat\": cat, \"status\": status,\n \"categories\": Feedback.CATEGORY_CHOICES,\n \"statuses\": Feedback.STATUS_CHOICES,\n })",
"newString": " messages.error(request, \"Feedback text cannot be empty.\")\n\n # Submit-only page (2026-08-28): submissions are NOT displayed publicly;\n # triage happens in the Django admin.\n return render(request, \"dashboard/feedback.html\", {\n \"categories\": Feedback.CATEGORY_CHOICES,\n })",
"originalFile": "\"\"\"Page views for the RH-WEBSITE dashboard. All research data read-only.\"\"\"\nimport json\nfrom pathlib import Path\n\nfrom django.conf import settings\nfrom django.contrib import messages\nfrom django.http import Http404\nfrom django.shortcuts import redirect, render\n\nfrom . import research_data as rd\nfrom .models import Feedback\n\n\ndef home(request):\n state = rd.parse_state()\n results = rd.get_results()\n return render(request, \"dashboard/home.html\", {\n \"stats\": rd.summary_stats(),\n \"position\": state.get(\"CURRENT POSITION\", \"\"),\n \"latest\": results[-1] if results else None,\n })\n\n\ndef dashboard(request):\n state = rd.parse_state()\n return render(request, \"dashboard/dashboard.html\", {\n \"position\": state.get(\"CURRENT POSITION\", \"\"),\n \"next_action\": state.get(\"NEXT ACTION\", \"\"),\n \"blockers\": state.get(\"BLOCKERS\", \"\"),\n \"checklist\": rd.parse_checklist(),\n \"stats\": rd.summary_stats(),\n \"commits\": rd.git_log(12),\n \"new_feedback\": Feedback.objects.filter(status=\"new\").count(),\n \"sessions\": rd.get_sessions()[-4:],\n })\n\n\ndef roadmap(request):\n nguyen = rd.REPO / \"NGUYEN.md\"\n return render(request, \"dashboard/roadmap.html\", {\n \"html\": rd.render_markdown(rd.read_text(nguyen)) if nguyen.exists() else \"\",\n \"mtime\": rd._iso(nguyen.stat().st_mtime) if nguyen.exists() else None,\n })\n\n\ndef ledger(request):\n return render(request, \"dashboard/ledger.html\", {\"results\": rd.get_results()})\n\n\ndef ledger_detail(request, rid):\n row = rd.get_result(rid)\n if not row:\n raise Http404\n path = (rd.RESEARCH / \"results\" / Path(row[\"file\"]).name).resolve()\n if (rd.RESEARCH / \"results\").resolve() not in path.parents or not path.exists():\n raise Http404\n return render(request, \"dashboard/ledger_detail.html\", {\n \"row\": row,\n \"html\": rd.render_markdown(rd.read_text(path)),\n \"mtime\": rd._iso(path.stat().st_mtime),\n })\n\n\ndef experiments(request):\n rows = rd.get_experiments()\n for row in rows:\n sc = rd.experiment_sidecar(row)\n row[\"checks\"] = (sc or {}).get(\"checks\") or {}\n row[\"task\"] = (sc or {}).get(\"task\", \"\")\n return render(request, \"dashboard/experiments.html\", {\"experiments\": rows})\n\n\ndef experiment_detail(request, eid):\n row = rd.get_experiment(eid)\n if not row:\n raise Http404\n sidecar = rd.experiment_sidecar(row)\n chart = rd.chart_data(row)\n return render(request, \"dashboard/experiment_detail.html\", {\n \"exp\": row,\n \"sidecar\": sidecar,\n \"chart_json\": json.dumps(chart) if chart else None,\n \"preview\": rd.csv_preview(row),\n })\n\n\ndef collection(request, kind):\n if kind not in rd.MD_COLLECTIONS:\n raise Http404\n meta = {}\n if kind == \"derivations\":\n meta = {Path(d[\"file\"]).stem: d for d in rd.get_derivations()}\n elif kind == \"graveyard\":\n meta = {Path(g[\"file\"]).stem: g for g in rd.get_graveyard()}\n return render(request, \"dashboard/collection.html\", {\n \"kind\": kind,\n \"items\": rd.collection_list(kind),\n \"meta\": meta,\n })\n\n\ndef collection_item(request, kind, name):\n if kind not in rd.MD_COLLECTIONS:\n raise Http404\n item = rd.collection_item(kind, name)\n if not item:\n raise Http404\n return render(request, \"dashboard/collection_item.html\", {\n \"kind\": kind, \"item\": item})\n\n\ndef search(request):\n q = (request.GET.get(\"q\") or \"\").strip()\n return render(request, \"dashboard/search.html\", {\n \"search\": rd.search_archive(q) if q else None,\n \"q\": q,\n })\n\n\ndef scripts(request):\n return render(request, \"dashboard/scripts.html\",\n {\"scripts\": rd.script_list()})\n\n\ndef script_detail(request, name):\n item = rd.script_item(name)\n if not item:\n raise Http404\n sel_csv = request.GET.get(\"csv\")\n try:\n page = max(1, int(request.GET.get(\"page\", \"1\")))\n except ValueError:\n page = 1\n for i, f in enumerate(item[\"files\"]):\n f[\"idx\"] = i\n if f[\"kind\"] == \"csv\":\n f[\"table\"] = rd.csv_page(\n f[\"path\"], page if sel_csv == str(i) else 1)\n elif f[\"kind\"] == \"json\":\n f[\"pretty\"] = rd.json_pretty(f[\"path\"])\n return render(request, \"dashboard/script_detail.html\", {\n \"item\": item, \"sel_csv\": sel_csv, \"page\": page})\n\n\ndef lean(request):\n files = rd.lean_files()\n audits = rd.lean_audits()\n return render(request, \"dashboard/lean.html\", {\n \"toolchain\": rd.lean_toolchain(),\n \"files\": files,\n \"audits\": audits,\n \"closed_source\": rd.lean_closed_source(),\n \"perimeter\": rd.lean_perimeter(),\n \"totals\": {\n \"files\": len(files),\n \"lines\": sum(f[\"lines\"] for f in files),\n \"decls\": sum(f[\"decls\"] for f in files),\n \"sorries\": sum(f[\"sorries\"] for f in files),\n \"audits\": len(audits),\n \"audit_decls\": sum(a[\"decls\"] for a in audits),\n },\n })\n\n\ndef lean_detail(request, name):\n item = rd.lean_item(name)\n if not item:\n raise Http404\n return render(request, \"dashboard/lean_detail.html\", {\"item\": item})\n\n\ndef lean_audit(request, name):\n item = rd.lean_audit_item(name)\n if not item:\n raise Http404\n return render(request, \"dashboard/lean_audit.html\", {\"item\": item})\n\n\ndef paper(request):\n folder = rd.RESEARCH / \"paper\"\n files = []\n if folder.exists():\n for p in sorted(folder.iterdir()):\n if p.is_file():\n files.append({\"name\": p.name,\n \"size\": p.stat().st_size,\n \"mtime\": rd._iso(p.stat().st_mtime)})\n paper = folder / \"paperA.tex\"\n paper_head = None\n if paper.exists():\n paper_head = \"\\n\".join(rd.read_text(paper).splitlines()[:80])\n return render(request, \"dashboard/paper.html\", {\n \"files\": files, \"paper_head\": paper_head, \"paper_name\": paper.name,\n \"paper_mtime\": rd._iso(paper.stat().st_mtime) if paper.exists() else None,\n })\n\n\ndef live(request):\n return render(request, \"dashboard/live.html\", {\"logs\": rd.run_logs()})\n\n\ndef conversations(request):\n if not rd.agent_available():\n raise Http404\n return render(request, \"dashboard/conversations.html\", {\n \"sessions\": rd.agent_sessions(),\n })\n\n\ndef conversation_session(request, spk):\n session = rd.agent_session(spk)\n if not session:\n raise Http404\n q = (request.GET.get(\"q\") or \"\").strip()\n kind = request.GET.get(\"kind\") or \"\"\n messages_list = rd.agent_messages(spk, q=q or None, kind=kind or None)\n return render(request, \"dashboard/conversation_session.html\", {\n \"session\": session,\n \"messages_list\": messages_list,\n \"q\": q, \"kind\": kind,\n \"kinds\": [(\"\", \"Everything\"), (\"user\", \"Prompts (user)\"),\n (\"thinking\", \"Thinking\"), (\"text\", \"Replies (text)\"),\n (\"tool\", \"Tool use\")],\n })\n\n\ndef conversation_message(request, spk, mid):\n session = rd.agent_session(spk)\n msg = rd.agent_message(spk, mid)\n if not session or not msg:\n raise Http404\n return render(request, \"dashboard/conversation_message.html\", {\n \"session\": session, \"msg\": msg,\n })\n\n\ndef feedback(request):\n if request.method == \"POST\":\n text = (request.POST.get(\"text\") or \"\").strip()\n name = (request.POST.get(\"name\") or \"\").strip()[:120]\n category = request.POST.get(\"category\") or \"general\"\n valid = {c for c, _ in Feedback.CATEGORY_CHOICES}\n if category not in valid:\n category = \"general\"\n if text:\n fb = Feedback.objects.create(name=name, category=category, text=text)\n # Dual storage: JSON file per submission (RH-WEBSITE.md \u00a75).\n fb_dir = Path(settings.BASE_DIR) / \"feedback\"\n fb_dir.mkdir(exist_ok=True)\n payload = {\n \"id\": fb.id,\n \"created\": fb.created.isoformat(),\n \"name\": fb.name,\n \"category\": fb.category,\n \"text\": fb.text,\n \"status\": fb.status,\n }\n fname = f\"FB-{fb.created:%Y%m%dT%H%M%S}-{fb.id:04d}.json\"\n (fb_dir / fname).write_text(\n json.dumps(payload, indent=2), encoding=\"utf-8\")\n # Email notification (production only \u2014 FEEDBACK_NOTIFY_EMAIL is\n # set in the deployed settings patch; unset locally = no-op).\n # A mail failure must never break a submission.\n notify = getattr(settings, \"FEEDBACK_NOTIFY_EMAIL\", None)\n if notify:\n try:\n from django.core.mail import send_mail\n send_mail(\n subject=\"[researchai.dev] New feedback: \"\n f\"{fb.get_category_display()}\",\n message=(\n \"New feedback submitted on researchai.dev\\n\\n\"\n f\"From: {fb.name or 'Anonymous'}\\n\"\n f\"Category: {fb.get_category_display()}\\n\"\n f\"Date (UTC): {fb.created:%Y-%m-%d %H:%M:%S}\\n\\n\"\n f\"{fb.text}\\n\\n\"\n \"-- Review it at \"\n \"https://researchai.dev/admin/dashboard/feedback/\\n\"\n ),\n from_email=getattr(settings, \"DEFAULT_FROM_EMAIL\", None),\n recipient_list=[notify],\n fail_silently=True,\n )\n except Exception: # noqa: BLE001 \u2014 never break a submission\n pass\n messages.success(request, \"Thank you \u2014 your feedback has been recorded.\")\n return redirect(\"feedback\")\n messages.error(request, \"Feedback text cannot be empty.\")\n\n q = (request.GET.get(\"q\") or \"\").strip()\n cat = request.GET.get(\"category\") or \"\"\n status = request.GET.get(\"status\") or \"\"\n items = Feedback.objects.all()\n if q:\n from django.db.models import Q\n items = items.filter(Q(text__icontains=q) | Q(name__icontains=q))\n if cat:\n items = items.filter(category=cat)\n if status:\n items = items.filter(status=status)\n return render(request, \"dashboard/feedback.html\", {\n \"items\": items[:200],\n \"q\": q, \"cat\": cat, \"status\": status,\n \"categories\": Feedback.CATEGORY_CHOICES,\n \"statuses\": Feedback.STATUS_CHOICES,\n })\n",
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"oldLines": 21,
"newStart": 287,
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"lines": [
" return redirect(\"feedback\")",
" messages.error(request, \"Feedback text cannot be empty.\")",
" ",
"- q = (request.GET.get(\"q\") or \"\").strip()",
"- cat = request.GET.get(\"category\") or \"\"",
"- status = request.GET.get(\"status\") or \"\"",
"- items = Feedback.objects.all()",
"- if q:",
"- from django.db.models import Q",
"- items = items.filter(Q(text__icontains=q) | Q(name__icontains=q))",
"- if cat:",
"- items = items.filter(category=cat)",
"- if status:",
"- items = items.filter(status=status)",
"+ # Submit-only page (2026-08-28): submissions are NOT displayed publicly;",
"+ # triage happens in the Django admin.",
" return render(request, \"dashboard/feedback.html\", {",
"- \"items\": items[:200],",
"- \"q\": q, \"cat\": cat, \"status\": status,",
" \"categories\": Feedback.CATEGORY_CHOICES,",
"- \"statuses\": Feedback.STATUS_CHOICES,",
" })",
" "
]
}
],
"userModified": false,
"replaceAll": false
}
tool: Edit ok
input
{
"file_path": "D:\\Python\\Quantum\\NGUYEN.md",
"old_string": "- [ ] 0.1 Parse notes.txt; index all quantum equations for Track B.",
"new_string": "- [x] 0.1 Parse notes.txt; index all quantum equations for Track B.\n \u2192 research/derivations/D-001 (living master tool index, Part I done)"
}
result 2026-08-17 18:27:10Z → 2026-08-29 05:44:36Z
{
"filePath": "D:\\Python\\Quantum\\RH-WEBSITE.md",
"oldString": "- Dual storage (mirrors NGUYEN.md \u00a78.2): JSON file per submission in\n `web/feedback/FB-<utc>-<id>.json` + row in `web/feedback.db`.\n- Search: full-text (name+text) + category/status filters.",
"newString": "- Dual storage (mirrors NGUYEN.md \u00a78.2): JSON file per submission in\n `web/feedback/FB-<utc>-<id>.json` + row in `web/feedback.db`.\n- **Submit-only page (user directive 2026-08-28):** submissions are NOT\n displayed publicly \u2014 the Submissions list AND the Search form were\n removed from `/feedback/` (search would leak all feedback via queries).\n Triage happens in the Django admin Feedback changelist (\u00a75A).",
"originalFile": "# RH-WEBSITE.md \u2014 NGUYEN-RH-1 Research Website\n# Standing plan + operations document. READ FIRST when doing website work.\n# Created: 2026-08-19 | Status: ACTIVE | Version: 1.0\n# ============================================================\n\n## 0. \u26d4 HARD RULE \u2014 READ FIRST (user directive, 2026-08-19)\n**DO NOT WRITE to any research document.** The research archive\n(NGUYEN.md, STATE.md, everything under `research/`, git history) is the\nsingle source of truth and is modified ONLY by the research agent per\nNGUYEN.md \u00a78.4. Website work may touch ONLY:\n- `D:\\Python\\Quantum\\web\\` (all website code, data, logs)\n- `D:\\Python\\Quantum\\RH-WEBSITE.md` (this file)\n\nThe website reads research files exclusively through READ-ONLY handles:\nSQLite via `mode=ro` URI, text files opened `'r'`. Feedback submissions\ngo to `web/feedback/` + `web/feedback.db` \u2014 never into `research/`.\nWhen committing, stage ONLY `web/` and `RH-WEBSITE.md` by name.\n\n## 1. PURPOSE\nPublic-facing-style (localhost-only) interactive dashboard for the\nNGUYEN-RH-1 Riemann Hypothesis research project. Goals:\n- Landing page explaining RH and the research mission to a general audience.\n- Live progress: current stage, next action, metrics \u2014 auto-updating as the\n research agent writes to the file system.\n- Browsable archive: results, experiments (+ interactive charts),\n derivations, graveyard, journal, resources atlas, paper status.\n- Feedback channel: visitors submit comments/suggestions; searchable;\n researcher reviews them to help the research.\n\n## 2. ARCHITECTURE\n- Location: `D:\\Python\\Quantum\\web\\` \u2014 Django project `rhweb`, app `dashboard`.\n- Interpreter: project `.venv` (`./.venv/Scripts/python.exe`).\n Deps: `web/requirements-web.txt` (Django, markdown).\n- Server: `python web/manage.py runserver 127.0.0.1:8001` \u2014 localhost only.\n- Frontend: vanilla JS + vendored Plotly.js (interactive charts) +\n vendored MathJax (tex-chtml) for math in markdown. NO CDN dependency.\n- Live updates: frontend polls `GET /api/status/` every 3 s; the endpoint\n reports file mtimes + parsed STATE.md + active run-logs + new-feedback\n count + summary_stats (checklist counters, phase table, collection\n counts); changed panels refresh in place. No WebSockets/Redis.\n\n### Data flow (all read-only on research/)\n| Source | How read | Used by |\n|---|---|---|\n| STATE.md | parse `## SECTION` blocks ('r') | Dashboard, status bar |\n| NGUYEN.md | checklist \u00a75 `- [x]/[~]/[ ]` counts; \u00a77 ledger | Dashboard metrics, Roadmap |\n| research/research.db | sqlite3 `file:...?mode=ro` | Ledger, Experiments, Derivations, Graveyard, Journal indexes |\n| research/numerics/data/*.json | json.load ('r') | Experiment cards (checks, key values, caveats) |\n| research/numerics/data/*.csv | csv module, downsampled | Plotly charts, table previews |\n| research/**/*.md | python-markdown + math-protect | Archive pages |\n| research/numerics/data/*-run.log | tail (last N lines) | Live Runs page |\n| git log | `git log --oneline` subprocess (read-only) | Dashboard activity feed |\n\n## 3. FILE MAP\n```\nweb/\n\u251c\u2500\u2500 manage.py\n\u251c\u2500\u2500 lockcheck.py # \u00a70 verification: proves the server never\n\u2502 # blocks writers (run: .venv python web/lockcheck.py)\n\u251c\u2500\u2500 requirements-web.txt\n\u251c\u2500\u2500 rhweb/ # project: settings.py, urls.py, wsgi.py\n\u251c\u2500\u2500 dashboard/\n\u2502 \u251c\u2500\u2500 research_data.py # ALL read-only parsers (single module to audit \u00a70)\n\u2502 \u251c\u2500\u2500 models.py # Feedback + VisitorLog models (web/feedback.db ONLY)\n\u2502 \u251c\u2500\u2500 middleware.py # VisitorLogMiddleware (access log \u2192 feedback.db)\n\u2502 \u251c\u2500\u2500 admin.py # Django admin: feedback triage + visitor log views\n\u2502 \u251c\u2500\u2500 views.py # pages (feedback POST also emails dan@researchai.dev)\n\u2502 \u251c\u2500\u2500 api.py # /api/health, /api/status, /api/logtail\n\u2502 \u251c\u2500\u2500 urls.py\n\u2502 \u251c\u2500\u2500 templates/dashboard/*.html\n\u2502 \u2514\u2500\u2500 static/dashboard/{style.css, app.js, vendor/plotly.min.js, vendor/tex-chtml.js}\n\u251c\u2500\u2500 feedback/ # one JSON per submission (dual storage)\n\u251c\u2500\u2500 feedback.db # SQLite index for search (Django default DB)\n\u2514\u2500\u2500 logs/ # server.log, healthcheck.log\n```\n\n## 4. PAGES (left sidebar)\n1. **Home** `/` \u2014 RH explainer, mission, 4 attack tracks, success ladder.\n2. **Dashboard** `/dashboard/` \u2014 current stage (STATE.md), next action,\n progress metrics (phases bar, tasks done/total, ledger size), git feed.\n3. **Roadmap** `/roadmap/` \u2014 NGUYEN.md \u00a75 checklist rendered w/ status.\n4. **Search** `/search/` \u2014 global archive search (see \u00a77 note): AND-of-terms\n case-insensitive scan across all MD_COLLECTIONS markdown; snippets with\n line numbers + highlighted matches; results hits link to /ledger/R-NNN/.\n5. **Results Ledger** `/ledger/` + `/ledger/R-NNN/` \u2014 claims + honesty tags.\n6. **Experiments** `/experiments/` + `/experiments/E-NNN/` \u2014 sidecar cards;\n Plotly charts from CSVs (config in research_data.CHARTS); pass/fail badges.\n7. **Scripts & Data** `/scripts/` + `/scripts/<stem>/` \u2014 all experiment\n scripts; per-script data files (experiment-table links \u222a exact-stem\n matches) shown as paginated spreadsheet tables (500 rows/page, sticky\n header + row-number gutter, numeric right-align) + JSON sidecars +\n collapsible verbatim source-code view.\n8. **Derivations** `/derivations/` + detail \u2014 37 D-files, math rendered.\n9. **Graveyard** `/graveyard/` \u2014 documented dead ends.\n10. **Journal** `/journal/` + detail \u2014 session narratives.\n11. **Resources** `/resources/` + detail \u2014 43-note RH-equivalence atlas.\n12. **Paper** `/paper/` \u2014 paperA.tex status (first 80 lines), paper-folder\n inventory.\n13. **Lean Proofs** `/lean/` + `/lean/<file>/` + `/lean/audit/<txt>/` \u2014\n formal-verification transparency: toolchain + totals, axiom-policy card,\n LiClosed.lean verbatim, the 7-perimeter defs extracted verbatim,\n per-file declaration tables + source, #print-axioms audit transcripts.\n14. **Live Runs** `/live/` \u2014 tail view of *-run.log, 3 s polling.\n15. **Feedback** `/feedback/` \u2014 submit form + search (text, category, status).\n16. **Conversations** `/conversations/` \u2014 browse the Nguyen CLI conversation\n index (`~/.nguyen/projects/D--Python-Quantum/agent.db`, outside the repo,\n opened read-only): session list; per-session message cards with\n thinking/tool blocks (collapsible), FTS search + kind filters; single\n message view `/conversations/<spk>/msg/<id>/` with prev/next arrows,\n arrow-key navigation, jump-to-id, raw JSON row view.\n\n## 5. FEEDBACK SYSTEM\n- Submit: name (optional), category (general/suggestion/question/correction/\n track-A/B/C/D), text. CSRF-protected; autoescaped on render.\n- Dual storage (mirrors NGUYEN.md \u00a78.2): JSON file per submission in\n `web/feedback/FB-<utc>-<id>.json` + row in `web/feedback.db`.\n- Search: full-text (name+text) + category/status filters.\n- Statuses: new \u2192 reviewed \u2192 acted-on (status changes are website data,\n allowed under \u00a70; researcher notes field for follow-up).\n- **Email notification (2026-08-28, VERIFIED live):** every submission also\n emails `dan@researchai.dev` via the server's local Exim\n (`EMAIL_HOST=127.0.0.1:25`, From `noreply@researchai.dev`) \u2014 production\n only, `FEEDBACK_NOTIFY_EMAIL` lives in the deployed settings patch (unset\n locally = no-op); `fail_silently` + try/except so mail can never break a\n submission. (MX for researchai.dev is MS365; SPF `include:secureserver.net`\n covers this host; DMARC passes via SPF alignment.)\n - \u26a0 GOTCHA (found + fixed 2026-08-28): cPanel **Email Routing** for\n researchai.dev MUST be **Remote Mail Exchanger**. As a hosted domain it\n defaulted to local, so Exim never consulted the public MX and\n `/etc/valiases/researchai.dev` silently DISCARDED `dan@` (cPanel Track\n Delivery showed \"Discard\"; MS365 quarantine empty because MS365 never\n saw the mail). Verified after the switch by a live feedback-form test +\n a direct smtplib test over SSH \u2014 both received in the MS365 inbox.\n - OPS NOTE: the SSH shell is CageFS-jailed \u2014 it CANNOT see\n `/etc/valiases`, `/etc/localdomains`, or `/var/log/exim_mainlog`\n (all \"No such file\"). Delivery verification is inbox receipt + cPanel\n Track Delivery; SMTP-path testing works (127.0.0.1:25 accepts).\n\n## 5A. ADMIN BACKEND + VISITOR LOG (2026-08-28)\n- **Django admin at `/admin/`** \u2014 the researcher's private backend:\n Feedback changelist (list-editable status, filters, search, date\n hierarchy) + VisitorLog changelist (read-only, append-only).\n Login: user `dan` + the same password as the SSH account (user choice\n 2026-08-28). Superuser created over SSH via\n `DJANGO_SUPERUSER_*` env vars + `createsuperuser --noinput`.\n- **Visitor log:** `dashboard/middleware.py` VisitorLogMiddleware appends\n one row per public GET/POST to `dashboard_visitorlog` in feedback.db:\n created, ip, method, path, query, referrer, user_agent, is_bot (UA regex).\n Skips `/static/`, `/api/` (3 s polling would flood it), `/admin/`,\n `/favicon.ico`; exceptions swallowed \u2014 logging never breaks a page.\n Raw Apache log also readable at `~/access-logs/researchai.121swr.com-ssl_log`\n (researchai.dev traffic logs under the cPanel auto-subdomain).\n- Admin statics: collected into docroot `/static/admin/` via\n `collectstatic` on the server (127 files, 2026-08-28).\n- OPS GOTCHAS (learned 2026-08-28): (1) in paramiko `exec_command` shells\n `$PWD` is NOT set \u2014 use absolute paths in PYTHONPATH, plus\n `DJANGO_SETTINGS_MODULE=rhweb.settings` for bare-python scripts;\n (2) any POST to the live site needs an `Origin: https://researchai.dev`\n header or Django CSRF 403s (admin login, feedback); (3) server-side\n management: `cd $SITE && PYTHONPATH=$SITE/app/vendor:$SITE/app/web\n /opt/alt/python311/bin/python3.11 app/web/manage.py <cmd>`.\n\n## 6. OPERATIONS\n### 6.1 Session-start protocol (website work)\n1. Read this file.\n2. Run `./.venv/Scripts/python.exe web/healthcheck.py --restart`\n (checks /api/health + all routes + status-API freshness; restarts the\n server if unreachable). Fix any failing route before other work.\n3. Check the watchdog is alive: `web/logs/watchdog.log` tail should show\n entries within the last ~10 min; if not, restart it (\u00a76.2b).\n4. Review new feedback: `web/feedback.db` status='new' (or the /feedback/\n page); surface relevant items to the user.\n5. Improvement pass (standing order, user 2026-08-19): look for at least\n one interface or data-presentation improvement per session; log ideas\n in \u00a78 below and implement the worthwhile ones.\n### 6.2 Start server (detached, sandbox DISABLED \u2014 long-run rule)\n```\ncd D:\\Python\\Quantum && ./.venv/Scripts/python.exe web/manage.py runserver \\\n 127.0.0.1:8001 >> web/logs/server.log 2>&1 # DETACHED_PROCESS\n```\n### 6.2b Watchdog (always-on monitoring, started 2026-08-19)\n`web/watchdog.py` runs detached between sessions: every 300 s it runs the\nhealth checks and restarts the server if unreachable. Logs:\n`web/logs/watchdog.log` + `web/logs/healthcheck.log`.\nStart detached: `subprocess.Popen([sys.executable, 'web/watchdog.py'], ...)`\nwith DETACHED_PROCESS (same pattern as \u00a76.2).\n### 6.3 Restart / health\n- Stop: find PID via `netstat -ano | findstr :8001`, `taskkill /PID <pid> /F`.\n- **Restart required after ANY code OR template change** (templates are\n cached in-process \u2014 a home.html edit did not appear until restart,\n 2026-08-19). Static CSS/JS changes serve immediately \u2014 BUT runserver\n sends no cache headers, so browsers heuristic-cache them: after ANY\n style.css/app.js change, ALSO bump the `?v=` query on both tags in\n `templates/dashboard/base.html` (convention: date-serial, e.g.\n `?v=20260827-2`) or visitors keep running stale assets (hamburger\n breakage, 2026-08-27).\n NOTE: port is **8001** since 2026-08-19 \u2014 port 8000 is reserved for the\n user's other service (do not use it).\n- Log tail: `web/logs/server.log`.\n- First run after code change to models:\n `./.venv/Scripts/python.exe web/manage.py migrate`.\n### 6.4 Updating the site when research data changes shape\n- New experiment: automatic (db + sidecars). Charts: add entry to\n `research_data.CHARTS` (x/y columns, type).\n- New markdown folders: register in `research_data.MD_COLLECTIONS`.\n- Never patch around \u00a70 \u2014 if a feature needs research-archive writes,\n STOP and ask the user.\n### 6.5 Lock-safety guarantees (verified 2026-08-19, web/lockcheck.py)\n- Text/md/CSV/log reads use Python 'r' handles (Windows share mode allows\n concurrent writers) and close immediately after each read.\n- research.db / agent.db opened SQLite mode=ro per query, closed in finally;\n shared read lock exists only for the duration of each SELECT (ms).\n- Server runs --noreload: no autoreload file watchers held open.\n- git log is read-only plumbing (no index lock).\n- Empirical: 24 s of 4-thread HTTP load across all heavy pages while taking\n 120 DB write locks (BEGIN IMMEDIATE/ROLLBACK) + 360 write-intent file\n opens on STATE.md, NGUYEN.md, CSVs, run-logs \u2014 zero conflicts, zero stalls.\n\n### 6.6 Production deployment \u2014 researchai.dev (live since 2026-08-27)\nThe public site runs on a shared Apache host via a CGI adapter; the local\nrepo is NOT modified for deployment (staging copy carries the prod patches).\n- **FTP login (user directive 2026-08-27: stored here for future use):**\n - Server: `121swr.com` port 21 (plain FTP / explicit FTPS).\n \u26a0 `ftp.121swr.com` does NOT exist in DNS \u2014 use `121swr.com`.\n - Username: `[ftp-user]@researchai.dev`\n - Password: `[REDACTED]`\n - FTP root = web docroot. `SITE CHMOD` works; MFMT honored (preserves\n mtimes \u2014 upload.py already sets them).\n- **SSH login (user directive 2026-08-28: stored here for future use):**\n - IP address: `208.109.226.46`, port `22`\n - cPanel username: `[cpanel-user]`\n - Password: `[REDACTED]`\n - The NGUYEN-RH-1 website lives in `~/public_html/researchai.dev`\n (corrected 2026-08-28 \u2014 NOT the account `/public_html` root).\n - **\u2b50 STANDING DIRECTIVE (user, 2026-08-28): use SSH/SFTP instead of\n FTP for ALL server ops from now on** (uploads, updates, shell work) \u2014\n it supersedes the FTP/upload.py workflow below. Verified working\n 2026-08-28 (password auth, CloudLinux EL8). `paramiko 5.0.0` is\n installed in the project `.venv` for scripted SSH/SFTP.\n- \u26a0 This file now contains live credentials: **NEVER upload RH-WEBSITE.md\n to the web host** (it is not in the deploy set \u2014 keep it that way).\n- Architecture: `.htaccess` routes non-file requests to `/app.cgi`\n (wsgiref CGIHandler \u2192 Django WSGI); statics in `/static/` served by\n Apache; all code/data under `/app/` (blocked by rewrite rule +\n `/app/.htaccess` Require all denied). Server Python:\n `/opt/alt/python311/bin/python3.11` (3.11.15); vendored Django 5.2.17 +\n markdown in `/app/vendor/`. agent.db lives at `/app/web/database/agent.db`.\n- Staging + tooling: `D:\\Python\\quantum-deploy\\` \u2014 `docroot/` (server\n mirror), `upload.py` (resumable 6-thread FTP, size-skip + MFMT; run\n DETACHED \u2014 CLI kills foreground Bash at ~2 min), `fix_mtimes.py`,\n `smoke_test.py`, `verify_site.py`. FTP password is passed via the\n `FTP_PASS` env var, never written into the scripts.\n- Re-deploy: re-copy web/+research/+STATE.md+NGUYEN.md into\n `docroot/app/`, re-apply the deployed-only patches (prod settings.py,\n AGENT_DB path, scripts badges, Paper nav link hidden \u2014 user directive\n 2026-08-27, route stays live), then `FTP_PASS=... python upload.py`.\n\n## 7. IMPROVEMENT BACKLOG (standing order \u2014 review each session)\n\u26d4 DELIBERATE EXCLUSION (user directive, 2026-08-27):\n`research/correspondence/` (the Lagarias F-D package) is PRIVATE until\nthe user decides to publish \u2014 do NOT build any website view of it, and\ndo not re-propose it in coverage audits. Everything else in the\nresearch archive was verified fully covered by the site on 2026-08-27.\n\nIdeas not yet implemented, ranked by value:\n1. Conversations: \"new activity\" badge when agent.db grows between polls.\n2. Experiments: diff view when a sidecar's checks change between runs.\n3. Charts: E-019 zero-flow needs series-column grouping support.\n4. Search snippets: highlight ALL query terms in each snippet (currently\n only the term at the snippet's anchor position gets <mark>).\n5. Mobile: plain .tbl tables inside cards can overflow very narrow\n screens \u2014 wrap like .table-scroll.\nDone:\n- 2026-08-27: MM-DD-YYYY date format + nowrap date columns (user request) \u2014\n new dashboard/templatetags/usdate.py filter applied to every UI date\n render across 17 templates (Updated columns, file-detail lines,\n Roadmap/Paper \"Last updated\", ledger/experiment/session dates); date\n table cells get class=\"date\" with .tbl td.date{white-space:nowrap} so\n hyphens no longer break the line; app.js freshness line formats\n MM-DD-YYYY HH:MM:SS UTC. Archive markdown content dates stay verbatim\n ISO (\u00a70 verbatim rule \u2014 UI chrome only). Asset version bumped\n (?v=20260827-5). OPS NOTE: a server generation started BEFORE the new\n templatetags/ dir existed 500s on {% load usdate %} (stale importlib\n dir cache) \u2014 healthcheck --restart is mandatory after adding\n templatetags modules; the watchdog self-healed this instance.\n- 2026-08-27: topbar search box on every page (user request) \u2014 compact\n GET form in the sticky topbar (right side), submits to /search/?q=\u2026;\n prefilled on the search page itself; topbar now flex with the task\n text ellipsized; on \u2264900px the \"Current task:\" label hides and the\n input narrows. Full-site crawl the same day: 300 pages, all 200, no\n broken internal links (2 flagged /conversations/ pages were false\n positives \u2014 archived session content literally contains traceback\n text). Asset version bumped (?v=20260827-4).\n- 2026-08-27: Lean Proofs section `/lean/` (user request, full design) \u2014\n transparency cards (toolchain v4.33.0-rc2, axiom policy, 29 files /\n 27,906 lines / 879 decls / 5 skeleton-only sorries / 22 audits / 483\n audited decls), LiClosed.lean verbatim inline, the 7-perimeter def\n blocks extracted verbatim with plain-language notes, per-file detail\n pages (parsed declaration table + full source), audit transcript\n viewer. Sorries counted as proof-terms only (by-sorry / :=-sorry) \u2014\n matches the documented \"1 Suzuki + 4 valley\" exactly; the session-013\n audit's 5 sorryAx labelled \"intended skeletons\" (not a failure).\n Healthcheck now 27 routes.\n- 2026-08-27: Scripts & Data page `/scripts/` (user request) \u2014 index of all\n 45 research/numerics/scripts/*.py with their experiment links + data\n files; detail pages render each CSV as a spreadsheet table (500-row\n server-side pagination, sticky header, sticky row-number gutter with\n true CSV line numbers, numeric-column right-align, hover stripes) and\n each JSON sidecar as a collapsible pretty-printed block. Script\u2192data\n mapping = experiments-table links \u222a exact-stem matches (verified: all\n 45 scripts resolve correctly; utility scripts show \"none registered\").\n Routes added to healthcheck (now 24); traversal guard verified 404.\n- 2026-08-27: mobile/responsive sidebar (backlog #3) \u2014 at \u2264 900px the\n sidebar goes off-canvas (translateX transition) behind a hamburger\n button in the sticky topbar; backdrop tap, Escape, or any menu-link\n click closes it; state is body.nav-open (aria-expanded wired);\n content padding shrinks to 16px. Desktop layout unchanged.\n- 2026-08-27: dashboard + home stat counters auto-refresh (backlog #4) \u2014\n /api/status/ now carries summary_stats(); app.js updates all counters\n (dashboard: done/partial/open/results/experiments/feedback; home: done/\n results/experiments/derivations/graveyard/sessions) every 3 s, and\n rebuilds the dashboard phases table on change only (signature compare,\n DOM-API build \u2014 no innerHTML). Static git-feed / recent-sessions tables\n intentionally left server-rendered.\n- 2026-08-27: global search page `/search/` (backlog #1) \u2014 AND-of-terms\n case-insensitive scan-on-query across all MD_COLLECTIONS markdown\n (results/derivations/graveyard/journal/resources); up to 3 snippets per\n file with line numbers + <mark> highlights; results hits mapped to\n /ledger/R-NNN/; 100-file cap with truncation notice; sidebar entry;\n /search/ + a sample query added to the healthcheck ROUTES (now 22).\n Also: watchdog found dead (last log 2026-08-21) and respawned detached.\n- 2026-08-19: healthcheck.py + watchdog.py (\u00a76.1/\u00a76.2b); Home latest-result\n card now dynamic (was hardcoded R-004); dashboard data-freshness line\n (STATE.md/research.db/agent.db, live via polling); E-017 chart.\n- 2026-08-22: bug fixes. (1) git_log 500 on /dashboard/ \u2014 subprocess\n decoded git's UTF-8 commit output as cp1252; reader thread died on\n Unicode commit messages and stdout came back None. Fixed with\n encoding=\"utf-8\", errors=\"replace\" + a None guard. (2) Roadmap Phase 2 /\n 5B checklists rendered as paragraph text \u2014 those phases have a note\n paragraph directly above the list (no blank line) and python-markdown\n never lets a list interrupt a paragraph (sane_lists or not). Fixed with\n research_data._restore_interrupted_lists: inserts the missing blank line\n before a list that follows paragraph text (skips indented item\n continuations so existing lists stay tight; skips fenced code). Archive\n text rendered verbatim as before \u2014 block structure only.\n- 2026-08-20: math typography pass APPLIED then REVERTED same day (user\n directive). Context: MathJax 3.2.2 works (resources atlas has real\n LaTeX); the research archive writes plain Unicode math, so MathJax has\n nothing to typeset there \u2014 that is the correct, intended rendering.\n A display-formula-lifting heuristic (research_data._display_formulas +\n .math-line styling) was built and then removed at user request:\n **the website renders the research archive VERBATIM \u2014 no presentation\n transforms, no conversions, no re-boxing of archive text.** Do not\n re-attempt Unicode\u2192LaTeX conversion or formula-detection heuristics;\n the archive's plain-Unicode math is the source of truth and its\n verbatim display is correct by definition.\n\n## 8. BUILD STATUS\n- [x] Plan written (v1.0, 2026-08-19)\n- [x] Dependencies installed (Django 6.1, markdown 3.10.3); vendored JS\n (plotly 2.35.2, MathJax 3.2.2 tex-chtml)\n- [x] Django scaffold (rhweb project + dashboard app)\n- [x] Parsers / views / API (research_data.py read-only layer)\n- [x] Templates / CSS / JS (12 pages, sidebar, 3 s polling, Plotly charts)\n- [x] Server verified live at 127.0.0.1:8001 \u2014 all 15 routes 200;\n feedback POST/search verified; path-traversal guard verified;\n smoke-test data cleaned up\n- [x] Initial commit (web/ + RH-WEBSITE.md only)\n",
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"-- Search: full-text (name+text) + category/status filters.",
"+- **Submit-only page (user directive 2026-08-28):** submissions are NOT",
"+ displayed publicly \u2014 the Submissions list AND the Search form were",
"+ removed from `/feedback/` (search would leak all feedback via queries).",
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" - Statuses: new \u2192 reviewed \u2192 acted-on (status changes are website data,",
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tool: Edit ok
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{
"file_path": "D:\\Python\\Quantum\\STATE.md",
"old_string": "# STATE.md \u2014 NGUYEN-RH-1 RESUME POINT\n# \u2b50 READ THIS FIRST at the start of every session.\nLast updated: 2026-08-17 | Session: 001 (archive installation)\n\n## CURRENT POSITION\nPhase 0 \u2014 Initialization & Ingestion. Research archive system installed.\n\n## COMPLETED\n- [x] Project blueprint written (NGUYEN.md)\n- [x] Mission prompt ingested (RHC-Prompt.txt)\n- [x] Research archive structure + session protocol installed (see NGUYEN.md \u00a78)\n- [x] Git repository initialized; SQLite catalog created (research/research.db)\n\n## IN PROGRESS\n(none \u2014 clean stop)\n\n## NEXT ACTION\nPhase 0.1: Parse Notes.txt; index quantum equations for Track B\n\u2192 output file: research/derivations/D-001-quantum-formalism-index.md\n\n## OPEN CONJECTURES / THREADS\n(none yet)\n\n## BLOCKERS\n(none)\n\n## HANDOFF NOTES\n- Resources confirmed present: Notes.txt, Anthropic paper PDF, .venv (mpmath stack TBD in 0.6).\n- Session protocol: see NGUYEN.md \u00a78. Journal every session; update this file last.",
"new_string": "# STATE.md \u2014 NGUYEN-RH-1 RESUME POINT\n# \u2b50 READ THIS FIRST at the start of every session.\nLast updated: 2026-08-17 | Session: 001 (Phase 0.1 complete)\n\n## CURRENT POSITION\nPhase 0 \u2014 Initialization & Ingestion. 0.1 done; starting 0.2 next.\n\n## COMPLETED\n- [x] Project blueprint written (NGUYEN.md)\n- [x] Mission prompt ingested (RHC-Prompt.txt)\n- [x] Research archive structure + session protocol installed (NGUYEN.md \u00a78)\n- [x] Git repository initialized; SQLite catalog created (research/research.db)\n- [x] Standing order \u00a74A (full-knowledge combination, web research) added\n- [x] Pacing/sub-stage rules \u00a78.5 + plan-mutability directive \u00a75 added\n- [x] 0.1: Notes.txt parsed \u2192 research/derivations/D-001 master tool index\n (Part I quantum formalism: 14 equations annotated for RH roles;\n Part II number theory = placeholder for 0.2\u20130.4; Part III web log)\n\n## IN PROGRESS\n(none \u2014 clean stop)\n\n## NEXT ACTION\nPhase 0.2: Deep-read \"Anthropic Riemann Hypothesis Paper.pdf\"; reproduce\nthe main chain line by line \u2192 research/derivations/D-002. Also populate\nD-001 Part II with the paper's machinery as it is mastered.\nNOTE (\u00a78.5): 0.2 is heavy \u2014 break into sub-stages:\n 0.2a = statements + notation map (Thms A/B, definitions)\n 0.2b = zero side (Weil form, Gabor compression, Lemma 2.1)\n 0.2c = prime side (Montgomery second moment, R(\u03c8) theory)\n 0.2d = rank\u2013trace lemma 3.2 + main chain assembly\n 0.2e = \u00a77.2 sharpness/ceiling analysis\n\n## OPEN CONJECTURES / THREADS\n- Q6 uncertainty-principle \u2194 bandwidth-one ceiling bridge (from D-001):\n formalize via Benedicks-type Fourier uncertainty; feeds Track A task 1.1.\n- Q14 Gutzwiller/primes-as-orbits: central Track B heuristic, Phase 2.\n\n## BLOCKERS\n(none)\n\n## HANDOFF NOTES\n- db.py now supports: init, log-experiment, add-result, add-derivation,\n add-graveyard, list.\n- Break prompt rule active: ask before long runs, especially near 5:00 PM.\n"
}
result 2026-08-17 18:27:10Z → 2026-08-27 16:17:37Z
{
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"originalFile": "\"\"\"\nRH-WEBSITE health check (RH-WEBSITE.md \u00a76).\n\nChecks the server end to end:\n 1. GET /api/health/ responds ok\n 2. Every public route returns 200\n 3. /api/status/ carries fresh research-state fields\n\nUsage:\n ./.venv/Scripts/python.exe web/healthcheck.py # check only\n ./.venv/Scripts/python.exe web/healthcheck.py --restart # restart if down\n\nExit code 0 = healthy (or successfully restarted), 1 = unhealthy.\nAppends one line per run to web/logs/healthcheck.log.\n\"\"\"\nimport subprocess\nimport sys\nimport time\nimport urllib.request\nfrom datetime import datetime, timezone\nfrom pathlib import Path\n\nBASE = \"http://127.0.0.1:8001\"\nROOT = Path(__file__).resolve().parent.parent\nLOG = Path(__file__).resolve().parent / \"logs\" / \"healthcheck.log\"\n\nROUTES = [\n \"/\", \"/dashboard/\", \"/roadmap/\", \"/ledger/\", \"/ledger/R-004/\",\n \"/experiments/\", \"/experiments/E-015/\",\n \"/derivations/\", \"/derivations/D-037-finite-height-theorem/\",\n \"/graveyard/\", \"/graveyard/G-001-multiple-zero-bounds/\",\n \"/journal/\", \"/journal/session-008/\",\n \"/resources/\", \"/paper/\", \"/live/\", \"/feedback/\",\n \"/conversations/\",\n \"/api/health/\", \"/api/status/\",\n]\n\n\ndef _get(path, timeout=10):\n with urllib.request.urlopen(BASE + path, timeout=timeout) as r:\n return r.status, r.read()\n\n\ndef run_checks():\n failures = []\n try:\n status, _ = _get(\"/api/health/\", timeout=5)\n if status != 200:\n failures.append(\"/api/health/ not 200\")\n except Exception as e: # noqa: BLE001\n return [f\"server unreachable: {e}\"] # nothing else will work\n\n for route in ROUTES:\n try:\n status, _ = _get(route)\n if status != 200:\n failures.append(f\"{route} -> {status}\")\n except Exception as e: # noqa: BLE001\n failures.append(f\"{route} -> {e}\")\n\n try:\n import json\n _, body = _get(\"/api/status/\")\n data = json.loads(body)\n for field in (\"next_action\", \"position\", \"mtimes\", \"server_time\"):\n if field not in data:\n failures.append(f\"/api/status/ missing {field}\")\n except Exception as e: # noqa: BLE001\n failures.append(f\"/api/status/ parse: {e}\")\n return failures\n\n\ndef restart():\n python = ROOT / \".venv\" / \"Scripts\" / \"python.exe\"\n log = open(ROOT / \"web\" / \"logs\" / \"server.log\", \"a\", encoding=\"utf-8\")\n subprocess.Popen(\n [str(python), \"web/manage.py\", \"runserver\", \"127.0.0.1:8001\", \"--noreload\"],\n cwd=str(ROOT), stdout=log, stderr=subprocess.STDOUT,\n creationflags=subprocess.DETACHED_PROCESS | subprocess.CREATE_NEW_PROCESS_GROUP)\n time.sleep(5)\n\n\ndef log_line(msg):\n LOG.parent.mkdir(exist_ok=True)\n ts = datetime.now(timezone.utc).isoformat(timespec=\"seconds\")\n with open(LOG, \"a\", encoding=\"utf-8\") as fh:\n fh.write(f\"{ts} {msg}\\n\")\n\n\ndef main():\n do_restart = \"--restart\" in sys.argv\n failures = run_checks()\n\n if failures and do_restart and any(\"unreachable\" in f for f in failures):\n log_line(f\"DOWN ({failures[0]}) \u2014 restarting\")\n restart()\n failures = run_checks()\n if not failures:\n log_line(\"restart successful \u2014 healthy\")\n\n if failures:\n log_line(f\"UNHEALTHY: {'; '.join(failures[:5])}\")\n print(\"UNHEALTHY:\")\n for f in failures:\n print(\" -\", f)\n sys.exit(1)\n log_line(f\"OK ({len(ROUTES)} routes)\")\n print(f\"healthy \u2014 {len(ROUTES)} routes OK\")\n sys.exit(0)\n\n\nif __name__ == \"__main__\":\n main()\n",
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[{"type":"text","text":"Now closing out Phase 0.1: indexes, database registration, STATE.md, checklist, journal."},{"type":"tool_use","id":"Edit_30","name":"Edit","input":{"file_path":"D:\\Python\\Quantum\\research\\derivations\\index.md","old_string":"| # | Title | Phase/Task | Status | Date |\n|---|-------|-----------|--------|------|\n| — | (empty) | | | |","new_string":"| # | Title | Phase/Task | Status | Date |\n|---|-------|-----------|--------|------|\n| D-001 | Master equation & tool index (quantum formalism; living doc) | 0.1 | in-progress (grows) | 2026-08-17 |"},"extra_content":null},{"type":"tool_use","id":"Edit_31","name":"Edit","input":{"file_path":"D:\\Python\\Quantum\\NGUYEN.md","old_string":"- [ ] 0.1 Parse notes.txt; index all quantum equations for Track B.","new_string":"- [x] 0.1 Parse notes.txt; index all quantum equations for Track B.\n → research/derivations/D-001 (living master tool index, Part I done)"},"extra_content":null},{"type":"tool_use","id":"Edit_32","name":"Edit","input":{"file_path":"D:\\Python\\Quantum\\STATE.md","old_string":"# STATE.md — NGUYEN-RH-1 RESUME POINT\n# ⭐ READ THIS FIRST at the start of every session.\nLast updated: 2026-08-17 | Session: 001 (archive installation)\n\n## CURRENT POSITION\nPhase 0 — Initialization & Ingestion. Research archive system installed.\n\n## COMPLETED\n- [x] Project blueprint written (NGUYEN.md)\n- [x] Mission prompt ingested (RHC-Prompt.txt)\n- [x] Research archive structure + session protocol installed (see NGUYEN.md §8)\n- [x] Git repository initialized; SQLite catalog created (research/research.db)\n\n## IN PROGRESS\n(none — clean stop)\n\n## NEXT ACTION\nPhase 0.1: Parse Notes.txt; index quantum equations for Track B\n→ output file: research/derivations/D-001-quantum-formalism-index.md\n\n## OPEN CONJECTURES / THREADS\n(none yet)\n\n## BLOCKERS\n(none)\n\n## HANDOFF NOTES\n- Resources confirmed present: Notes.txt, Anthropic paper PDF, .venv (mpmath stack TBD in 0.6).\n- Session protocol: see NGUYEN.md §8. Journal every session; update this file last.","new_string":"# STATE.md — NGUYEN-RH-1 RESUME POINT\n# ⭐ READ THIS FIRST at the start of every session.\nLast updated: 2026-08-17 | Session: 001 (Phase 0.1 complete)\n\n## CURRENT POSITION\nPhase 0 — Initialization & Ingestion. 0.1 done; starting 0.2 next.\n\n## COMPLETED\n- [x] Project blueprint written (NGUYEN.md)\n- [x] Mission prompt ingested (RHC-Prompt.txt)\n- [x] Research archive structure + session protocol installed (NGUYEN.md §8)\n- [x] Git repository initialized; SQLite catalog created (research/research.db)\n- [x] Standing order §4A (full-knowledge combination, web research) added\n- [x] Pacing/sub-stage rules §8.5 + plan-mutability directive §5 added\n- [x] 0.1: Notes.txt parsed → research/derivations/D-001 master tool index\n (Part I quantum formalism: 14 equations annotated for RH roles;\n Part II number theory = placeholder for 0.2–0.4; Part III web log)\n\n## IN PROGRESS\n(none — clean stop)\n\n## NEXT ACTION\nPhase 0.2: Deep-read \"Anthropic Riemann Hypothesis Paper.pdf\"; reproduce\nthe main chain line by line → research/derivations/D-002. Also populate\nD-001 Part II with the paper's machinery as it is mastered.\nNOTE (§8.5): 0.2 is heavy — break into sub-stages:\n 0.2a = statements + notation map (Thms A/B, definitions)\n 0.2b = zero side (Weil form, Gabor compression, Lemma 2.1)\n 0.2c = prime side (Montgomery second moment, R(ψ) theory)\n 0.2d = rank–trace lemma 3.2 + main chain assembly\n 0.2e = §7.2 sharpness/ceiling analysis\n\n## OPEN CONJECTURES / THREADS\n- Q6 uncertainty-principle ↔ bandwidth-one ceiling bridge (from D-001):\n formalize via Benedicks-type Fourier uncertainty; feeds Track A task 1.1.\n- Q14 Gutzwiller/primes-as-orbits: central Track B heuristic, Phase 2.\n\n## BLOCKERS\n(none)\n\n## HANDOFF NOTES\n- db.py now supports: init, log-experiment, add-result, add-derivation,\n add-graveyard, list.\n- Break prompt rule active: ask before long runs, especially near 5:00 PM.\n"},"extra_content":null}]