[{"type":"thinking","thinking":"Now I have all 43 headings. Create research/resources/index.md with a catalog: each note, topic, what it provides, and which project track/task it feeds. Organize by category:\n\nCategories:\nA. Foundations (definitions & representations): Dirichlet Series, Euler Product, Eta, Gamma-Integral, Fractional-Part Integral, Functional Equation, Hadamard Product, ξ Function, Ξ(t) reality, Trivial Zeros/RH statement, −ζ′/ζ, Stieltjes Constants, Hasse's series, Negative Values, ζ(2k), ζ(3), Detailed Compendium (60-eq master).\nB. Zeros: counting & explicit formulas: Riemann–von Mangoldt, Mean Spacing, Bounding S(T), von Mangoldt Explicit Formula, Riemann's π(x), Weil's Explicit Formula, Riemann–Siegel.\nC. RH equivalences (the atlas core): Li's Criterion, Lagarias' Positivity, Robin & Lagarias, Nyman–Beurling & Báez-Duarte, Redheffer, Mertens, Riesz & Hardy–Littlewood, Salem, Volchkov, Franel–Landau, Speiser, De Bruijn–Newman, Von Koch–Schoenfeld, Hilbert–Pólya/Berry–Keating.\nD. Statistics & conjectures: Montgomery Pair Correlation, Keating–Snaith, Second and Fourth Moments, Selberg's CLT, Lindelöf.\n\nMap each to project tracks/tasks:\n- Li's Criterion + Lagarias' Positivity → Track C tasks 3.2/3.5/3.8 (E-011/E-015/E-021, D-032/D-033/D-036/D-037). Schoenfeld 8π + Büthe in Von Koch note → D-037.\n- Weil's Explicit Formula → Track A foundation (D-002–D-008) + Track B Suzuki (R-003).\n- Bounding S(T) → D-036 constants (Hasanalizade–Shen–Wong alternative).\n- Hilbert–Pólya/Berry–Keating → Track B (2.2).\n- De Bruijn–Newman → 3.3 (closed, G-003).\n- Speiser → 1.7/T4b (closed, D-031).\n- Montgomery/Keating–Snaith/moments/Selberg/Lindelöf → RMT background; Track A G-002 moment-ladder context.\n- Riemann–Siegel → numerics (zetazero backend).\n- von Mangoldt/RvM counting → E-002, D-036 N(T).\n- Stieltjes constants → E-011/E-015 η machinery.\n- Hasse series → potential alternative λ_n computation route.\n- Franel–Landau, Salem, Volchkov, Mertens, Riesz & H–L, Robin & Lagarias, Nyman–Beurling, Redheffer → criteria atlas; cross-pollination reservoir (§4A).\n\nThen:\n1. Write research/resources/index.md.\n2. Update NGUYEN.md §2 manifest with R7.\n3. Commit these.\n4. Regroup summary.\n\nShould I register in research.db? Schema has sessions, results, graveyard, derivations, experiments. Resources don't fit a table; skip. Check db.py schema? The schema is in numerics/scripts/schema.sql — could check quickly, but adding resources registration likely not in schema. Skip; index.md + NGUYEN.md manifest is the right place.\n\nAlso D-001 pointer — per §4A.4 D-001 is the master tool index. Adding a one-line pointer to the atlas in D-001 Part III would be proper. Let me check D-001's Part III tail. That requires reading D-001. It's a \"living master tool index\". Let me grep its structure quickly.","signature":""},{"type":"text","text":"All 43 notes mapped. Now I'll create the reference index and register the atlas in the project manifest. First, a quick look at D-001's structure for the cross-link."},{"type":"tool_use","id":"Bash_10","name":"Bash","input":{"command":"cd /d/Python/Quantum && ls research/derivations/ | head -5 && grep -n \"Part III\" \"research/derivations/D-001-master-tool-index.md\" | head -5 && tail -20 \"research/derivations/D-001-master-tool-index.md\"","description":"Inspect D-001 structure for Part III insertion point"},"extra_content":null}]